| Operator | Route | Direction |
|---|---|---|
| CTB | B3 | Tuen Mun Pier Head to Shenzhen Bay Port |
| CTB | B3 | Shenzhen Bay Port to Tuen Mun Pier Head |
| CTB | B3 | Shenzhen Bay Port to Tuen Mun Ferry Pier (approach Hung Kiu) |
| CTB | B3A | Shan King Estate to Shenzhen Bay Port |
| CTB | B3A | Shenzhen Bay Port to Shan King Estate |
| CTB | B3A | Shenzhen Bay Port to Fu Tai Estate |
| CTB | B3M | Shenzhen Bay Port to Tuen Mun Station(Circular) |
| CTB | B3X | Tuen Mun Town Centre to Shenzhen Bay Port |
| CTB | B3X | Shenzhen Bay Port to Tuen Mun Town Centre |
| NLB | B2 | Yuen Long Station to Shenzhen Bay Port |
| NLB | B2 | Shenzhen Bay Port to Yuen Long Station |
| NLB | B2P | Tin Shui Wai (Tin Tsz Estate) to Shenzhen Bay Port |
| NLB | B2P | Shenzhen Bay Port to Tin Shui Wai (Tin Tsz Estate) |
| NLB | B2X | Tin Shui Wai (Tin Yiu Estate) to Shenzhen Bay Port |
| NLB | B2X | Shenzhen Bay Port to Tin Shui Wai (Tin Yiu Estate) |
| NLB | XB2 | Yuen Long MTR Station to Shenzhen Bay Port |
| NLB | XB2 | Shenzhen Bay Port to Yuen Long MTR Station |